Difference between revisions of "BioConductor analysis tutorial"
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| + | {{#security:edit|Sven}} | ||
| + | [[Category:Sven]] | ||
| + | {{#security:*|Sven,Tam,Andy}} | ||
====Analysis of dyeswap experiment==== | ====Analysis of dyeswap experiment==== | ||
*Read in GenePix GPR files | *Read in GenePix GPR files | ||
*Normalize using print tip loess smoothing | *Normalize using print tip loess smoothing | ||
*Diagnostics summaries and graphs | *Diagnostics summaries and graphs | ||
| − | *Statistical analysis → obtain a gene list | + | *Statistical analysis <font color="blue">→ obtain a gene list</font> |
| + | Block Row Column ID Name M A t P.Value B | ||
| + | 10396 20 15 23 [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?submit=y&db=Nucleotide&term=CN882776 171121_390_49] 171121 5.035364 13.25087 49.62425 3.220044e-05 11.27486 | ||
| + | 4517 9 13 9 20264_118_53 20264 4.396719 11.11976 47.06004 3.220044e-05 11.05671 | ||
| + | 16881 32 21 22 165415_634_53 165415 4.645384 12.65872 43.40359 3.220044e-05 10.70650 | ||
| + | 16086 31 10 9 185903_436_49 185903 5.146504 11.36911 42.75724 3.220044e-05 10.63926 | ||
| + | 6508 13 7 22 197386_457_55 197386 4.621024 13.20426 42.09902 3.220044e-05 10.56899 | ||
| + | 5471 11 8 20 142178_355_53 142178 4.795734 12.07427 41.23346 3.220044e-05 10.47374 | ||
| + | 8395 16 20 23 251706_1_53 251706 -5.003475 13.04571 -38.61325 3.220044e-05 10.16421 | ||
| + | 4330 9 5 6 297409_340_47 297409 4.421922 12.27208 38.52215 3.220044e-05 10.15284 | ||
| + | 12479 24 14 13 163360_396_47 163360 4.367943 11.10478 38.21662 3.220044e-05 10.11439 | ||
| + | 15024 29 10 5 149243_674_53 149243 4.372419 11.36572 37.86362 3.220044e-05 10.06935 | ||
<table class=document-code><tr><td> | <table class=document-code><tr><td> | ||
[[+Workshop.R]] | [[+Workshop.R]] | ||
</td></tr></table> | </td></tr></table> | ||
| + | |||
| + | = See also = | ||
| + | *[http://faculty.ucr.edu/~tgirke/Documents/R_BioCond/R_BioCondManual.html R and BioCondcutor tutorial] | ||
Latest revision as of 02:22, 22 May 2008
{{#security:edit|Sven}} {{#security:*|Sven,Tam,Andy}}
Analysis of dyeswap experiment
- Read in GenePix GPR files
- Normalize using print tip loess smoothing
- Diagnostics summaries and graphs
- Statistical analysis → obtain a gene list
Block Row Column ID Name M A t P.Value B 10396 20 15 23 171121_390_49 171121 5.035364 13.25087 49.62425 3.220044e-05 11.27486 4517 9 13 9 20264_118_53 20264 4.396719 11.11976 47.06004 3.220044e-05 11.05671 16881 32 21 22 165415_634_53 165415 4.645384 12.65872 43.40359 3.220044e-05 10.70650 16086 31 10 9 185903_436_49 185903 5.146504 11.36911 42.75724 3.220044e-05 10.63926 6508 13 7 22 197386_457_55 197386 4.621024 13.20426 42.09902 3.220044e-05 10.56899 5471 11 8 20 142178_355_53 142178 4.795734 12.07427 41.23346 3.220044e-05 10.47374 8395 16 20 23 251706_1_53 251706 -5.003475 13.04571 -38.61325 3.220044e-05 10.16421 4330 9 5 6 297409_340_47 297409 4.421922 12.27208 38.52215 3.220044e-05 10.15284 12479 24 14 13 163360_396_47 163360 4.367943 11.10478 38.21662 3.220044e-05 10.11439 15024 29 10 5 149243_674_53 149243 4.372419 11.36572 37.86362 3.220044e-05 10.06935
