Difference between revisions of "ReadGPR.R"
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Revision as of 04:15, 21 February 2006
library(limma) sessionInfo()
- 0 Set up directories
auxillaryDir <- "/Volumes/HD2/Data/Nutrigenomics/MultipleScans/Auxillary" dataDir <- "/Volumes/HD2/Data/Nutrigenomics/MultipleScans/GPR" plotDir <- "DiagnosticImages"
- 1) load targets and data
targets <- readTargets(dir(auxillaryDir), path=auxillaryDir)
type <- "median" source.type <- switch(type,
mean = "genepix",
median = "genepix.median"
)
print(paste("source =",source.type))
RG <- read.maimages(targets$Filename, path = dataDir, source=source.type, names=paste(targets$Filetype, targets$Scan),
wt.fun=wtflags(0))
RG$printer <- getLayout(RG$genes)
