Difference between revisions of "Installing BioConductor"
From Organic Design wiki
(Instructions for installing BioC) |
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<nowiki>source("http://www.bioconductor.org/getBioC.R") | <nowiki>source("http://www.bioconductor.org/getBioC.R") | ||
| − | + | source("http://www.bioconductor.org/biocLite.R")</nowiki> | |
Typing the following commands will display the source code of the functions for installing BioConductor automatically. 'getBioC' installs a fairly comprehensive installation, | Typing the following commands will display the source code of the functions for installing BioConductor automatically. 'getBioC' installs a fairly comprehensive installation, | ||
Revision as of 04:47, 30 June 2006
Configuring R to work behind a firewall
Within a company network you need to set the proxy server. The following command does this by setting an R environment variable to the proxy:port;
Sys.putenv("HTTP_PROXY"="[URL]:[PORT]")
Once this is set you can check if the variable is set with;
Sys.getenv("HTTP_PROXY")
Now you can fetch the following scripts over the internet;
source("http://www.bioconductor.org/getBioC.R")
source("http://www.bioconductor.org/biocLite.R")
Typing the following commands will display the source code of the functions for installing BioConductor automatically. 'getBioC' installs a fairly comprehensive installation, 'biocLite' installs a minimal installation.
getBioC biocLite
Type the following command to install Bioconductor getBioC() or biocLite() depending on type of installation.
