Difference between revisions of "Rosaceae"
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;# [[R tutorial]] (''45mins'') | ;# [[R tutorial]] (''45mins'') | ||
;# [[Linear models for Microarray analysis]] (''limma'') (''15 mins - Marcus Davy'') | ;# [[Linear models for Microarray analysis]] (''limma'') (''15 mins - Marcus Davy'') | ||
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Revision as of 21:07, 13 March 2006
Contents
Microarray analysis workshop
Time schedule: 8:30 - 10:30am, 11-12:30am (3.5 hours)
Workflow
- Introduction to Microarray analysis (10mins - Marcus Davy)
- Normalization (10mins - Robert Schaffer)
- Bioconductor/R framework (15 mins - Marcus Davy)
- R tutorial (45mins)
- Linear models for Microarray analysis (limma) (15 mins - Marcus Davy)
- Bioconductor analysis tutorial ("45mins")
Brief about Limma (10-15 mins)
- Essentially t-statistics for each spot/gene
- Uses between gene information in moderated t-statistics
- Computationally fast/robust
- Handles missing information/use defined flag information
- benefits/limitations?
- FDR control? → ranking better than selecting cutoff
