Difference between revisions of "Rosaceae"

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[[+R tutoral]]
+
[[+R tutorial]]
 
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</td></tr></table>
 
 
===== Brief about Limma (10-15 mins)=====
 
*Essentially t-statistics for each spot/gene
 
*Uses between gene information in moderated t-statistics
 
*Computationally fast/robust
 
* Handles missing information/use defined flag information
 
*benefits/limitations?
 
*FDR control? &rarr; ranking better than selecting cutoff
 
  
 
===== Analysis script (1+hours)=====
 
===== Analysis script (1+hours)=====

Revision as of 21:08, 13 March 2006

Microarray analysis workshop

Time schedule: 8:30 - 10:30am, 11-12:30am (3.5 hours)


Workflow

  1. Introduction to Microarray analysis (10mins - Marcus Davy)
  2. Normalization (10mins - Robert Schaffer)
  3. Bioconductor/R framework (15 mins - Marcus Davy)
  4. R tutorial (45mins)
  5. Linear models for Microarray analysis (limma) (15 mins - Marcus Davy)
  6. Bioconductor analysis tutorial ("45mins")

+Bioconductor/R framework

+R tutorial

Analysis script (1+hours)

+Workshop.R