ExploreGolub.R

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Revision as of 01:56, 30 August 2006 by Sven (talk | contribs) (Adding golub ''Affymetrix'' prelim analysis)
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library(multtest) data(golub)

nbreaks=100

x <- rowMeans(golub[,golub.cl==0]) y <- rowMeans(golub[,golub.cl==1])

mdplot(cbind(x,y))

hist(y-x, breaks=nbreaks) hist(2^(y-x), breaks=nbreaks)

  1. Abundance apears to be a slight mixture (hump more prevelant with background subtraction)
  2. Mixture could be of exponential and low expressing distribution on raw scale

hist((y+x)/2, breaks=nbreaks)

  1. Abundance, observed exponential like decay on raw scale

hist(2^((y+x)/2), breaks=nbreaks) qqplot(rexp(10000,1), 2^((y+x)/2)) abline(0,1)